2019

• Multi-dimensional immunoproteomics coupled with in vitro recapitulation of oncogenic NRAS^Q61R identifies diagnostically relevant autoantibody biomarkers in thyroid neoplasia. Belousov P, Afanasyeva M, Gubernatorova E, Bogolyubova A, Uvarova A, Putlyaeva L, Ramanauskaite E, Kopylov A, Demin D, Tatosyan K, Ustiugova A, Prokofjeva M, Lanshchakov K, Vanushko V, Zaretsky A, Severskaia N, Dvinskikh N, Abrosimov A, Kuprash D, Schwartz A.  Cancer Lett; 28.12.2019; 467:96-106. doi: 10.1016/j.canlet.2019.07.013.

• Spotlight on bioluminescence research. Lukyanov K.  Biochem Biophys Res Commun. 17.12.2019; 520(4):683-684. doi: 10.1016/j.bbrc.2019.10.004.

• Specificity of Cd, Cu, and Fe effects on barley growth, metal contents in leaves and chloroplasts, and activities of photosystem I and photosystem II. Lysenko E, Klaus A, Kartashov A, Kusnetsov V. Plant Physiol Biochem. 16.12.2019;147:191-204. doi: 10.1016/j.plaphy.

• Differences in lipidome and metabolome organization of prefrontal cortex among human populations. Tkachev A, Stepanova V, Zhang L, Khrameeva E, Zubkov D, Giavalisco P, Khaitovich P. Sci Rep. 04.12.2019; 9(1):18348. doi: 10.1038/s41598-019-53762-6.

• Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A.  Steward C, Roovers J, Suner M, Gonzalez J, Uszczynska-Ratajczak B, Pervouchine D, Fitzgerald S, Viola M, Stamberger H, Hamdan F, Ceulemans B, Leroy P, Nava C, Lepine A, Tapanari E, Keiller D, Abbs S, Sanchis-Juan A, Grozeva D, Rogers A, Diekhans M, Guigó R, Petryszak R, Minassian B, Cavalleri G, Vitsios D, Petrovski S, Harrow J, Flicek P, Lucy Raymond F, Lench N, Jonghe P, Mudge J, Weckhuysen S, Sisodiya S, Frankish A;  NPJ Genom Med. 02.12.2019; 4:31. doi: 10.1038/s41525-019-0106-7.

• Oligoglutamylation of E. coli ribosomal protein S6 is under growth phase control. Pletnev P, Nesterchuk M, Rubtsova M, Serebryakova M, Dmitrieva K, Osterman I, Bogdanov A, Sergiev P. Biochimie. 01.12.2019; 167:61-67. doi: 10.1016/j.biochi.2019.09.008.

• Mouse Trmt2B protein is a dual specific mitochondrial metyltransferase responsible for m⁵U formation in both tRNA and rRNA. Laptev I, Shvetsova E, Levitskii S, Serebryakova M, Rubtsova M, Bogdanov A Kamenski P, Sergiev P Dontsova O. RNA Biol. 27.10.2019; 1-10. doi: 10.1080/15476286.2019.1694733.

• Exploitation of Potentially New Antibiotics from Mangrove Actinobacteria in Maowei Sea by Combination of Multiple Discovery Strategies. Lu Q, Ye J, Huang Y, Liu D, Liu L, Dong K, Razumova E, Osterman I, Sergiev P, Dontsova O, Jia S, Huang D, Sun C. Antibiotics (Basel). 27.11.2019; 8(4). pii: E236. doi: 10.3390/antibiotics8040236.

• HypercubeME: two hundred million combinatorially complete datasets from a single experiment.  Esteban L, Lonishin L, Bobrovskiy D, Leleytner G, Bogatyreva N, Kondrashov F, Ivankov D. Bioinformatics. 19.10.2019; pii: btz841. doi: 10.1093/bioinformatics/btz841.

• An overview of immunoinformatics approaches and databases linking T cell receptor repertoires to their antigen specificity. Zvyagin IV, Tsvetkov V, Chudakov D, Shugay M; Immunogenetics. 18.11.2019. doi: 10.1007/s00251-019-01139-4.

• In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation. Smekalova E, Gerashchenko M, O’Connor P, Whittaker C, Kauffman K, Fefilova A, Zatsepin T, Bogorad R, Baranov P, Langer R, Gladyshev V, Anderson D, Koteliansky V. Mol Ther Nucleic Acids. 18.11.2019; 19:252-266. doi: 10.1016/j.omtn

• Virus-borne mini-CRISPR arrays are involved in interviral conflicts. Medvedeva S, Liu Y, Koonin E, Severinov K, Prangishvili D, Krupovic M.  Nat Commun. 15.11.2019; 10(1):5204. doi: 10.1038/s41467-019-13205-2.

• NHEJ pathway is involved in post-integrational DNA repair due to Ku70 binding to HIV-1 integrase. Knyazhanskaya E, Anisenko A, Shadrina O, Kalinina A, Zatsepin T, Zalevsky A, Mazurov D, Gottikh M; Retrovirology. 06.11.2019;16(1):30. doi: 10.1186/s12977-019-0492-z.

• Predictive models of protease specificity based on quantitative protease-activity profiling data. Fedonin G, Eroshkin A, Cieplak P, Matveev E, Ponomarev G, Gelfand M, Ratnikov B, Kazanov M. Biochim Biophys Acta Proteins Proteom. 01.11.2019; 1867(11):140253. doi: 10.1016/j.bbapap.2019.07.006.

• 2-Pyrazol-1-yl-thiazole derivatives as novel highly potent antibacterials. Ivanenkov Y, Yamidanov R, Osterman I, Sergiev P, Aladinskiy V, Aladinskaya A, Terentiev V, Veselov M, Ayginin A, Skvortsov D, Komarova K, Sadovnikov S, Matniyazov R, Sofronova A, Malyshev A, Machulkin A, Petrov R, Lukianov D, Iarovenko S, Bezrukov D, Baymiev A, Dontsova O; J Antibiot (Tokyo). 01.11.2019; 72(11):827-833. doi: 10.1038/s41429-019-0211-y.

• A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation. Olson B, Moghimi P, Schramm C, Obraztsova A, Ralph D, Vander Heiden J, Shugay M, Shepherd A, Lees W, Matsen F 4th. Front Immunol. 01.11.2019; 10:2533. doi: 10.3389/fimmu.2019.02533.

• Genome Maintenance Proteins Modulate Autoimmunity Mediated Primed Adaptation by the Escherichia coli Type I-E CRISPR-Cas System. Kurilovich E, Shiriaeva A, Metlitskaya A, Morozova N, Ivancic-Bace I, Severinov K, Savitskaya E. Genes (Basel).31.10.2019; 10(11). pii: E872. doi: 10.3390/genes10110872.

• Intratumoral immunoglobulin isotypes predict survival in lung adenocarcinoma subtypes. Isaeva O, Sharonov G, Serebrovskaya E, Turchaninova M, Zaretsky A, Shugay M, Chudakov D; J Immunother Cancer. 29.10.2019; 7(1):279. doi: 10.1186/s40425-019-0747-1.

• Influence of the First Chromophore-Forming Residue on Photobleaching and Oxidative Photoconversion of EGFP and EYFP. Sen T, Mamontova A, Titelmayer A, Shakhov A, Astafiev A, Acharya A, Lukyanov K, Krylov A Bogdanov A;  Int J Mol Sci. 22.10.2019; 20(20). pii: E5229. doi: 10.3390/ijms20205229.

• Risk stratification of cervical lesions using capture sequencing and machine learning method based on HPV and human integrated genomic profiles. Tian R, Cui Z, He D, Tian X, Gao Q, Ma X, Yang J, Wu J, Das B, Severinov K, Hitzeroth I, Debata P, Xu W, Zhong H, Fan W, Chen Y, Jin Z, Cao C, Yu M, Xie W, Huang Z, Bao Y, Xie H, Yao S, Hu Z. Carcinogenesis; 16.10.2019; 40(10):1220-1228. doi: 10.1093/carcin/bgz094.

• Allele-specific nonstationarity in evolution of influenza A virus surface proteins. Popova A, Safina K, Ptushenko V, Stolyarova A, Favorov A, Neverov A, Bazykin G. Proc Natl Acad Sci U S A. 15.10.2019; 116(42):21104-21112. doi: 10.1073/pnas.1904246116.

• Detection of spacer precursors formed in vivo during primed CRISPR adaptation. Shiriaeva A, Savitskaya E, Datsenko K, Vvedenskaya I, Fedorova I, Morozova N, Metlitskaya A, Sabantsev A, Nickels B, Severinov K, Semenova E Nat Commun. 10.10.2019; 10(1):4603. doi: 10.1038/s41467-019-12417-w.

• Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition. Travin D, Watson Z, Metelev M, Ward F, Osterman I, Khven I, Khabibullina N Serebryakova M, Mergaert P, Polikanov Y, Cate J, Severinov K. Nat Commun. 08.10.2019; 10(1):4563. doi: 10.1038/s41467-019-12589-5

• VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Bagaev D, Vroomans R, Samir J, Stervbo U, Rius C, Dolton G, Greenshields-Watson A, Attaf M, Egorov E, Zvyagin I, Babel N, Cole D, Godkin A, Sewell A, Kesmir C, Chudakov D, Luciani F, Shugay M.  Nucleic Acids Res.; 07.10.2019; pii: gkz874. doi: 10.1093/nar/gkz874.

• Competition-driven evolution of organismal complexity. Ispolatov I, Alekseeva E, Doebeli M.  PLoS Comput Biol.; 03.10.2019; 15(10):e1007388. doi: 10.1371/journal.pcbi.1007388.

• Using an Endogenous CRISPR-Cas System for Genome Editing in the Human Pathogen Clostridium difficile.  Maikova A, Kreis V, Boutserin A, Severinov K, Soutourina O; Appl Environ Microbiol. 01.10.2019; 85(20). pii: e01416-19. doi: 10.1128/AEM.01416-19.

• Transcriptome sequencing of hybrid bester sturgeon: Responses to poly (I:C) in the context of comparative immunogenomics. Mugue N, Terekhanova N, Afanasyev S, Krasnov A. Fish Shellfish Immunol. 01.10.2019; 93:888-894. doi: 10.1016/j.fsi.2019.08.038.

• Systematic prediction of functionally linked genes in bacterial and archaeal genomes. Shmakov S, Faure G, Makarova K, Wolf Y, Severinov K, Koonin E. Nat Protoc. 01.10.2019; (10):3013-3031. doi: 10.1038/s41596-019-0211-1.

• Genetics of Adaptation of the Ascomycetous Fungus Podospora anserina to Submerged Cultivation. Genome Kudryavtseva O, Safina K, Vakhrusheva O, Logacheva M, Penin A, Neretina T, Moskalenko V, Glagoleva E, Bazykin G, Kondrashov A Biol Evol.; 01.10.2019; 11(10):2807-2817. doi: 10.1093/gbe/evz194.

• A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies.Pogorelyy M, Shugay M; Front Immunol. 26.09.2019 ;10:2159. doi: 10.3389/fimmu.2019.02159.

• Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Sigalova O, Chaplin A, Bochkareva O, Shelyakin P, Filaretov V, Akkuratov E, Burskaia V, Gelfand M; BMC Genomics. 01.09.2019; 20(1):710. doi: 10.1186/s12864-019-6059-5.

• Focused ultrasound-mediated fluorescence of composite microcapsules loaded with magnetite nanoparticles: In vitro and in vivo study. Novoselova M, Voronin D, Abakumova T, Demina P, Petrov A, Petrov V, Zatsepin T, Sukhorukov G, Gorin D. Colloids Surf B Biointerfaces. 01.09.2019;181:680-687. doi: 10.1016/j.colsurfb.2019.06.025.

• Architecture of Parallel Adaptation in Ten Lacustrine Threespine Stickleback Populations from the White Sea Area. Terekhanova N, Barmintseva A, Kondrashov A, Bazykin G, Mugue N; Genome Biol Evol. 01.09.2019; 11(9):2605-2618. doi: 10.1093/gbe/evz175.

• Matching population diversity of rhizobial nodA and legume NFR5genes in plant-microbe symbiosis. Igolkina A, Bazykin G, Chizhevskaya E, Provorov N, Andronov E; Ecol Evol.; 30.08.2019; 9(18):10377-10386. doi: 10.1002/ece3.5556.

• Efficient in vivosynthesis of lasso peptide pseudomycoidin proceeds in the absence of both the leader and the leader peptidase. Zyubko T, Serebryakova M, Andreeva J, Metelev M,  Lippens G, Dubiley S,  Severinov K Chemical Science. 08.2019.

• Gene Expression Maps in Plants: Current State and Prospects.Klepikova A, Penin A. Plants (Basel); 28.08.2019;8(9). pii: E309. doi: 10.3390/plants8090309.

• Identification of Novel Antibacterials Using Machine Learning Techniques. Ivanenkov Y, Zhavoronkov A, Yamidanov R, Osterman I, Sergiev P, Aladinskiy V, Aladinskaya A, Terentiev V, Veselov M, Ayginin A, Kartsev V, Skvortsov D, Chemeris A, Baimiev A, Sofronova A, Malyshev A, Filkov G, Bezrukov D, Zagribelnyy B, Putin E, Puchinina M, Dontsova O. Front Pharmacol. 08.2019;10:913. doi: 10.3389/fphar.2019.00913.

• Beta-amyloid induces apoptosis of neuronal cells by inhibition of the Arg/N-end rule pathway proteolytic activity.Kechko O, Petrushanko I, Brower C, Adzhubei A, Moskalev A, Piatkov K, Mitkevich V, Makarov A  Aging (Albany NY); 08.2019;11(16):6134-6152. doi: 10.18632/aging.102177. Epub 2019 Aug 24.

• CRISPR-Cas in mobile genetic elements: counter-defence and beyond.Faure G, Shmakov S, Yan W, Cheng D, Scott D, Peters J, Makarova K, Koonin E. Nat Rev Microbiol; 01.08.2019; 7(8):513-525. doi: 10.1038/s41579-019-0204-7.

• Silver(I)-mediated base pairing in parallel-stranded DNA involving the luminescent cytosine analog 1,3-diaza-2-oxophenoxazine.Schönrath I, Tsvetkov V, Zatsepin T, Aralov A, Müller J; J Biol Inorg Chem.08.2019; 24(5):693-702. doi: 10.1007/s00775-019-01682-1.

• Red-Shifted Substrates for FAST Fluorogen-Activating Protein Based on the GFP-Like Chromophores.Povarova N , Zaitseva S, Baleeva N, Smirnov A, Myasnyanko I, Zagudaylova M, Bozhanova N, Gorbachev D, Malyshevskaya K, Gavrikov A, Mishin A, Baranov M; Chemistry. 07.2019; 25(41):9592-9596. doi: 10.1002/chem.201901151.

• Structural Basis of Leader Peptide Recognition in Lasso Peptide Biosynthesis Pathway. Sumida T, Dubiley S, Wilcox B, Severinov K, Tagami S. ACS Chem Biol. 19.07.2019; 14(7):1619-1627. doi: 10.1021/acschembio.9b00348.

• Noncoding RNA in Liver Regeneration-From Molecular Mechanisms to Clinical Implications.Sergeeva O, Sviridov E, Zatsepin T; Semin Liver Dis. 07.2019 . doi: 10.1055/s-0039-1693513.

• Red Fluorescent Genetically Encoded Voltage Indicators with Millisecond Responsiveness.Kost L, Ivanova V, Balaban P, Lukyanov K, Nikitin E, Bogdanov A; Sensors (Basel). 06.07.2019; 19(13). pii: E2982. doi: 10.3390/s19132982.

• eIF4G2 balances its own mRNA translation via a PCBP2-based feedback loop. Smirnova V, Shestakova E, Bikmetov D, Chugunova A, OstermanI, Serebryakova M, Sergeeva O, Zatsepin T, Shatsky I, Terenin I RNA.01.07.2019;25(7):757-767. doi: 10.1261/rna.065623.118. Epub 2019 Apr 22.

• Cytological Immunostaining of HMGA2, LRP1B, and TP63 as Potential Biomarkers for Triaging Human Papillomavirus-Positive Women.. Jiang Y, Zhu C, He D, Gao Q, Tian , Ma X, Wu J, Das BC, Severinov K, Hitzeroth I, Debata P, Liu R, Zou L, Shi L, Xu H, Wang K, Bao Y, Ka-Kit LR, You Z, Cui Z, Hu Z; Transl Oncol; 01.07.2019; 12(7):959-967. doi: 10.1016/j.tranon.2019.04.012.

• Long Noncoding RNA LL35/Falcor Regulates Expression of Transcription Factor Foxa2 in Hepatocytes in Normal and Fibrotic Mouse Liver.Sergeeva O, Korinfskaya S, Kurochkin I, Zatsepin T. Acta Naturae.07.2019;11(3):66-74. doi: 10.32607/20758251-2019-11-3-66-74.

• Detecting T cell receptors involved in immune responses from single repertoire snapshots.Pogorelyy M, Minervina A, Shugay M, Chudakov D, Lebedev Y, Mora T, Walczak A. PLoS Biol. 06.2019;17(6):e3000314. doi: 10.1371/journal.pbio.3000314.

• Studies on Antibacterial Activity and Diversity of Cultivable Actinobacteria Isolated from Mangrove Soil in Futian and Maoweihai of China.Li F, Liu S, Lu Q, Zheng H, Osterman I, Lukyanov D, Sergiev P, Dontsova O, Liu S, Ye J, Huang D, Sun C. Evid Based Complement Alternat Med. 09.06.2019; 2019:3476567. doi: 10.1155/2019/3476567. eCollection 2019.

• Circular exonic RNAs: When RNA structure meets topology. Pervouchine D, Biochim Biophys Acta Gene Regul Mech. 05.2019;1862(11-12):194384. doi: 10.1016/j.bbagrm.2019.05.002.

• Natural diversity of CRISPR spacers of Thermus: evidence of local spacer acquisition and global spacer exchange.Lopatina A, Medvedeva S, Artamonova D, Kolesnik M, Sitnik V, Ispolatov Y, Severinov K. Philos Trans R Soc Lond B Biol Sci. 13.05.2019 13;374(1772):20180092. doi: 10.1098/rstb.2018.0092.

• Functional duplication of Rap1 in methylotrophic yeasts.Malyavko A, Petrova O, Zvereva M, Dontsova O, Sci Rep. 10.05.2019;9(1):7196. doi: 10.1038/s41598-019-43595-8.

• Reiterative Synthesis by the Ribosome and Recognition of the N-Terminal Formyl Group by Biosynthetic Machinery Contribute to Evolutionary Conservation of the Length of Antibiotic Microcin C Peptide PrecursorZukher I, Pavlov M, Tsibulskaya D, Kulikovsky A, Zyubko T, Bikmetov D, Serebryakova M, Nair S, Ehrenberg M, Dubiley S, Severinov K.  30.04.2019;10(2). pii: e00768-19. doi: 10.1128/mBio.00768-19.

• DNA i-Motifs With Guanidino-i-Clamp Residues: The Counterplay Between Kinetics and Thermodynamics and Implications for the Design of pH SensorsTsvetkov V, Zatsepin T, Turaev A, Farzan V, Pozmogova G, Aralov A, Varizhuk A. Comput Struct Biotechnol J.04.2019;17:527-536. doi: 10.1016/j.csbj.2019.04.006. eCollection 2019.

• Systematic analysis of Type I-E Escherichia coli CRISPR-Cas PAM sequences ability to promote interference and primed adaptation.Musharova O, Sitnik V, Vlot M, Savitskaya E, Datsenko K Krivoy A, Fedorov I, Semenova E, Brouns S, Severinov K, Mol Microbiol.04.2019; 111(6):1558-1570. doi: 10.1111/mmi.14237.

• Identification of pyrrolo-pyridine derivatives as novel class of antibacterials.Veselov M, Ivanenkov Y, Yamidanov R, Osterman I, Sergiev P, Aladinskiy V, Aladinskaya A, Terentiev V, Ayginin A, Skvortsov D, Komarova K, Chemeris A, Baimiev A, Sofronova A, Machulkin A, Petrov R, Maklakova S, Bezrukov D, Filkov G, Zainullina L, Maximova M, Zileeva Z, Kartsev V, Vakhitova Y, Dontsova O Mol Divers.04.2019. doi: 10.1007/s11030-019-09946-3.

• Structure of dirithromycin bound to the bacterial ribosome suggests new ways for rational improvement of macrolides.Khabibullina N, Tereshchenkov A, Komarova E, Syroegin E, Shiriaev D, Paleskava A, Kartsev V, Bogdanov A, Konevega A, Dontsova O, Sergiev P, Osterman I, Polikanov Y, Antimicrob Agents Chemother. 01.04.2019 pii: AAC.02266-18. doi: 10.1128/AAC.02266-18.

• PiggyBac transposon tools for recessive screening identify B-cell lymphoma drivers in mice.Weber J, de la Rosa J, Grove C, Schick M, Rad L, Baranov O, Strong A, Pfaus A, Friedrich MJ, Engleitner T, Lersch R, Öllinger R, Grau M, Menendez IG, Martella M, Kohlhofer U, Banerjee R, Turchaninova M, Scherger A, Hoffman G, Hess J, Kuhn L, Ammon T, Kim J, Schneider G, Unger K, Zimber-Strobl U, Heikenwälder M, Schmidt-Supprian M, Yang F, Saur D, Liu P, Steiger K, Chudakov D, Lenz G, Quintanilla-Martinez L, Keller U, Vassiliou G, Cadiñanos J, Bradley A, Rad R. Nat Commun. 29.03.2019;10(1):1415. doi: 10.1038/s41467-019-09180-3.

• Comparative Genomic Analysis of the Regulation of Aromatic Metabolism in Betaproteobacteria. Front Microbiol.03.2019;10:642. doi: 10.3389/fmicb.2019.00642. eCollection Suvorova I, Gelfand M.

• Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay.Pervouchine D, Popov Y, Berry A, Borsari B, Frankish A, Guigó R. Nucleic Acids Res. 27.03.2019. pii: gkz193. doi: 10.1093/nar/gkz193.

• Micro-evolution of three Streptococcus species: selection, antigenic variation, and horizontal gene inflow.Shelyakin P, Bochkareva O, Karan A, Gelfand M. BMC Evol Biol. 27.03.2019;19(1):83. doi: 10.1186/s12862-019-1403-6.

• Bursts of amino acid replacements in protein evolution.R Soc Open Sci. 03.2019 ;6(3):181095. doi: 10.1098/rsos.181095. Stolyarova A, Bazykin G, Neretina T, Kondrashov A.

• Compounds based on 5-(perylen-3-ylethynyl)uracil scaffold: High activity against tick-borne encephalitis virus and non-specific activity against enterovirus A.Chistov A, Orlov A, Streshnev P, Slesarchuk N, Aparin I, Rathi B, Brylev V, Kutyakov S, Mikhura I, Ustinov A, Westman G, Palyulin VA, Jain N, Osolodkin D, Kozlovskaya L, Korshun V Eur J Med Chem. 16.03.2019;171:93-103. doi: 10.1016/j.ejmech.2019.03.029.

• Systematic analysis of Type I-E Escherichia coli CRISPR-Cas PAM sequences ability to promote interference and primed adaptation.Musharova O, Sitnik V, Vlot M, Savitskaya E, Datsenko K, Krivoy A, Fedorov I, Semenova E, Brouns S Severinov K. Mol Microbiol. 15.03.2019. doi: 10.1111/mmi.14237.

• Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.Ulianov S, Doronin S, Khrameeva E, Kos P, Luzhin A, Starikov S, Galitsyna A, Nenasheva V, Ilyin A, Flyamer I, Mikhaleva E, Logacheva M, Gelfand M, Chertovich A, Gavrilov A, Razin S, Shevelyov Y Nat Commun.03.2019;10(1):1176. doi: 10.1038/s41467-019-09185-y.

• The study of the phiKZ phage non-canonical non-virion RNA polymerase.Orekhova M, Koreshova A, Artamonova T, Khodorkovskii M, Yakunina M. Biochem Biophys Res Commun. 02.03.2019;511(4):759-764. doi: 10.1016/j.bbrc.2019.02.132. Epub 2019 Mar 2.

• Novel homo Yin-Yang probes improve sensitivity in RT-qPCR detection of low copy HIV RNA.Farzan V, Kvach M, Aparin I, Kireev D, Prikazchikova T, Ustinov A, Shmanai V, Shipulin G, Korshun V, Zatsepin T. Talanta. 01.03.2019;194:226-232. doi: 10.1016/j.talanta.2018.10.043.

• Synthesis and characterization of bacteriochlorin loaded magnetic nanoparticles (MNP) for personalized MRI guided photosensitizers delivery to tumor.Ostroverkhov P, Semkina A, Naumenko V, Plotnikova E, Melnikov P, Abakumova T, Yakubovskaya R, Mironov A, Vodopyanov S, Abakumov A, Majouga A, Grin M, Chekhonin V, Abakumov M.  J Colloid Interface Sci. 01.03.2019;537:132-141. doi: 10.1016/j.jcis.2018.10.087.

• LINC00116codes for a mitochondrial peptide linking respiration and lipid metabolism. Chugunova A, Loseva E, Mazin P, Mitina A, Navalayeu T, Bilan D, Vishnyakova P, Marey M, Golovina A, Serebryakova M, Pletnev P, Rubtsova M, Mair W, Vanyushkina A, Khaitovich P, Belousov V, Vysokikh M, Sergiev P, Dontsova O. Proc Natl Acad Sci U S A. 22.02.2019;116(11):4940-4945. doi: 10.1073/pnas.1809105116. Epub 2019 Feb 22.

• Nybomycin-producing Streptomyces isolated from carpenter ant Camponotus vagus.Zakalyukina Y, Birykov M, Lukianov D, Shiriaev D, Komarova E, Skvortsov D, Kostyukevich Y, Tashlitsky V, Polshakov V, Nikolaev E, Sergiev P, Osterman I.  21.02.2019;160:93-99. doi: 10.1016/j.biochi.2019.02.010.

• Integrated Mobile Genetic Elements in Thaumarchaeota.Krupovic M, Makarova K, Wolf Y, Medvedeva S, Prangishvili D, Forterre P, Koonin E. Environ Microbiol. 17.02.2019.  doi: 10.1111/1462-2920.14564.

• Xenogeneic Regulation of the Bacterial Transcription Machinery.Tabib-Salazar A, Mulvenna N, Severinov K, Matthews S, Wigneshweraraj S J Mol Biol.02.2019. pii: S0022-2836(19)30085-3. doi: 10.1016/j.jmb.2019.02.008.

• Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.Bayfield O, Klimuk E, Winkler D, Hesketh E, Chechik M, Cheng N, Dykeman E, Minakhin L, Ranson N, Severinov K, Steven A, Antson A. Proc Natl Acad Sci USA02.2019;116(9):3556-3561. doi: 10.1073/pnas.1813204116.

• Integrator is a key component of human telomerase RNA biogenesis.Rubtsova M, Vasilkova D, Moshareva M, Malyavko A, Meerson M, Zatsepin T, Naraykina Y, Beletsky A, Ravin N, Dontsova O. Sci Rep. 02.2019 8;9(1):1701. doi: 10.1038/s41598-018-38297-6.

• Memory CD4⁺T cells are generated in the human fetal intestine. Li N, van Unen V, Abdelaal T, Guo N, Kasatskaya S, Ladell K, McLaren J, Egorov E, Izraelson M, Chuva de Sousa Lopes S, Höllt T, Britanova O, Eggermont J, de Miranda N, Chudakov D, Price D, Lelieveldt B, Koning F Nat Immunol. 21.01.2019;20(3):301-312. doi: 10.1038/s41590-018-0294-9.

• Behavioral characterization of DAT-KO rats and evidence of asocial-like phenotypes in DAT-HET rats: The potential involvement of norepinephrine system.Adinolfi A, Zelli S, Leo D, Carbone C, Mus L, Illiano P, Alleva E, Gainetdinov R, Adriani W. Behav Brain Res. 01.02.2019;359:516-527. doi: 10.1016/j.bbr.2018.11.028.

• Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Ghilarov D, Stevenson C², Travin D, Piskunova J, Serebryakova M, Maxwell A, Lawson D, Severinov K.Mol Cell. 2019 Feb 21;73(4):749-762.e5. doi: 10.1016/j.molcel.2018.11.032. Epub 2019 Jan 17.

• Synthesis and evaluation of biological activity for dual-acting antibiotics on the basis of azithromycin and glycopeptides.Tevyashova A, Bychkova E, Korolev A, Isakova E, Mirchink E, Osterman I, Erdei R, Szücs Z, Batta G. Bioorg Med Chem 15.01.2019. pii: S0960-894X(18)30905-3. doi: 10.1016/j.bmcl.2018.11.038.

• Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional InterferenceYou L, Ma J, Wang J, Artamonova D, Wang M, Liu L, Xiang H, Severinov K, Zhang X, Wang Y Cell01.2019,   pii: S0092-8674(18)31451-X. doi: 10.1016/j.cell.2018.10.052.

• BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site.Gordeeva J, Morozova N, Sierro N, Isaev A, Sinkunas T, Tsvetkova K, Matlashov M, Truncaite L, Morgan R, Ivanov N, Siksnys V, Zeng L, Severinov K. Nucleic Acids Res. 01.2019; doi: 10.1093/nar/gky1125.

• Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome.Sutormin D, Rubanova N, Logacheva M, Ghilarov D, Severinov K. Nucleic Acids Res. 01.2019 doi: 10.1093/nar/gky1222.

• Effects of Population Dynamics on Establishment of a Restriction-Modification System in a Bacterial Host Graovac S, Rodic A, Djordjevic M,Severinov K, Djordjevic M  07.01.2019;24(1). pii: E198. doi: 10.3390/molecules24010198.

• Error-prone bypass of DNA lesions during lagging-strand replication is a common source of germline and cancer mutations. Seplyarskiy V, Akkuratov E, Akkuratova N, Andrianova M, Nikolaev S, Bazykin G, Adameyko I, Sunyaev S Nat Genet01.2019;51(1):36-41. doi: 10.1038/s41588-018-0285-7.

• Activation of trace amine-associated receptor 1 attenuates schedule-induced polydipsia in rats. Sukhanov I, Dorotenko A, Dolgorukova A, Hoener M, Gainetdinov R, Bespalov A. Neuropharmacology. 01.01.2019;144:184-192. doi: 10.1016/j.neuropharm.2018.10.034.

• Synthesis and evaluation of biological activity of benzoxaborole derivatives of azithromycin.Tevyashova A, Korolev A, Mirchink E, Isakova E, Osterman I. J Antibiot (Tokyo). 01.01.2019. doi: 10.1038/s41429-018-0107-2.

• Changes in Biological Pathways During 6,000 Years of Civilization in Europe.Chekalin E, Rubanovich A, Tatarinova T, Kasianov A, Bender N, Chekalina M, Staub K, Koepke N, Rühli F, Bruskin S, Morozova I Mol Biol Evol.01.2019;36(1):127-140. doi: 10.1093/molbev/msy201.