Research advisor: Professor Dmitrii Chudakov
Program entry year: 2019
Graduated from MSU, Faculty of Chemistry in 2019
Research project: Structural basis for T-cell receptor specificity and cross-reactivity prediction
Research interests: structural immunology, pathogenesis of autoimmune diseases, TCR-based immunotherapeutics, prediction of neoepitope immunogenicity
Publications:
Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones. Minervina A.A., Pogorelyy M.V., Komech E.A., Karnaukhov V.K., Bacher P., Rosati E., Franke A., Chudakov D.M., Mamedov I.Z., Lebedev Y.B., Mora T., Walczak A.M. Elife, 2020 9: e53704
HLA binding of self-peptides is biased towards proteins with specific molecular functions. Karnaukhov, W. Paes, I. Woodhouse, T. Partridge, A. Nicastri, S. Brackenridge, D. Scherbinin, D. Chudakov, I. Zvyagin, N. Ternette, H. Koohy, P. Borrow, M. Shugay. Preprint: https://www.biorxiv.org/content/10.1101/2021.02.16.431395v1
Conference presentations:
TCRen: a statistical potential for residue interaction that accurately predicts TCR:peptide recognition. Karnaukhov V., Shcherbinin D., Chugunov A., Chudakov D., Efremov R., Zvyagin I., Shugay M. ISMB/ECCB 2021 (3D-SIG: Structural Bioinformatics and Computational Biophysics). Oral presentation
HLA binding preferences of self-peptides are biased towards proteins with specific molecular functions. Karnaukhov V., Paes W., Woodhouse I., Partridge T., Nicastri A., Brackenridge S., Scherbinin D., Chudakov D., Zvyagin, Ternette N., Koohy H., Borrow P., Shugay M. Moscow Conference on Computational Molecular Biology 2021. Oral presentation
HLA variants differ in binding preferences of self-peptides from proteins with specific molecular functions. Karnaukhov V., Paes W., Woodhouse I., Partridge T., Nicastri A., Brackenridge S., Scherbinin D., Chudakov D., Zvyagin, Ternette N., Koohy H., Borrow P., Shugay M. European Congress of Immunology 2021. Poster presentation
Computational approach to predict epitopes for ankylosing spondylitis-related TCR. V.K. Karnaukhov, E.A. Komech, A.A. Myasoutova, A.I. Mikelov, D.S. Shcherbinin, M. Shugay, I.V. Zvyagin. 2nd Meeting on Stochasticity and Control in Adaptive Immune Repertoires, Paris, France (October 28-31, 2018). Poster presentation
Computational approach for prediction of autoimmune disease-associated T-cell receptor epitopes. V.K. Karnaukhov, E.A. Komech, A.A. Novikova, A.I. Mikelov, M. Shugay, A.O. Chugunov, I.V. Zvyagin. Moscow Conference on Computational Molecular Biology (MCCMB), Moscow (July 27-30, 2019). Poster presentation
PhD Graduate 2018
PhD Graduate 2017
PhD Graduate 2017
MSc student graduate 2019
MSc graduate 2018
MSc graduate 2019
Joint PhD Programm with Ben-Gurion University of the Negev
MSc graduate 2019
MSc graduate 2018
MSc graduate 2018
MSc graduate 2018
MSc graduate 2019
MSc graduate 2019
MSc graduate 2020
MSc student graduate 2019
Joint PhD Program with The University of Strasbourg
MSc student graduate 2019
MSc graduate 2018
MSc student graduate 2019
MSc student