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dmitriitravin

Dmitrii Travin

PhD student

Research advisor: Professor Konstantin Severinov

Program entry year: 2018

Graduated: Faculty of Bioengineering and Bioinformatics, MSU 2018

Research project: Novel thiazole/oxazole-containing peptides from soil bacteria

Research interestsnatural products diversity and biosynthesis, RiPPs, enzymology of peptide posttranslational modifications, translation inhibitors, systems of peptide transport, prokaryotic translation

Publications: 

  • [1]      D. Sutormin, A. Galivondzhyan, D. Travin, O. Musharova, A. Rusanova, S. Borukhov, K. Severinov “The Interaction Between Transcribing RNA Polymerase and Topoisomerase I Prevents R-loop Formation in E. coli”, Nat. Comms., 13:4524, Aug. 2022
  •  [2]     Q. Nicoud, Q. Barrière, N. Busset, S. Dendene, D. Travin, M. Bourge, R. Le Bars, C. Boulogne, M. Lecroël, S. Jenei, A. Kereszt, E. Kondorosi, E. G. Biondi, T. Timchenko, B. Alunni, and P. Mergaert “Sinorhizobium meliloti functions required for resistance to antimicrobial NCR peptides and bacteroid differentiation”, mBio, 12:e00895-21, Jul. 2021
  • [3]      D. Y. Travin, K. Severinov, and S. Dubiley, “Natural Trojan horse inhibitors of aminoacyl-tRNA synthetases,” RSC Chem. Biol., Feb. 2021
  • [4]      D. Y. Travin, D. Bikmetov, and K. Severinov, “Translation-Targeting RiPPs and Where to Find Them,” Front. Genet., 11:226, Mar. 2020
  • [5]      D. Y. Travin, Z. L. Watson, M. Metelev, F. R. Ward, I. A. Osterman, I. M. Khven, N. F. Khabibullina, M. Serebryakova, P. Mergaert, Y. S. Polikanov, J. H. D. Cate and K. Severinov, “Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition,” Nat. Comms.,  10:4563, Oct 2019 
  • [6]      Ghilarov, C. E. M. Stevenson, D. Y. Travin, J. Piskunova, M. Serebryakova, A. Maxwell, D. M. Lawson, and K. Severinov, “Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison.,” Mol. Cell, vol. 73, no. 4, pp. 749–762, Feb. 2019
  • [7]      D. Y. Travin, M. Metelev, M. Serebryakova, E. S. Komarova, I. A. Osterman, D. Ghilarov, and K. Severinov, “Biosynthesis of Translation Inhibitor Klebsazolicin Proceeds through Heterocyclization and N-Terminal Amidine Formation Catalyzed by a Single YcaO Enzyme.,” J. Am. Chem. Soc., vol. 140, no. 16, pp. 5625–5633, Apr. 2018.
  •  [8]     D. Y. Travin, I. Popov, A. T. Guler, D. Medvedev, S. van der Plas-Duivesteijn, M. Varela, I. C. R. M. Kolder, A. H. Meijer, H. P. Spaink, and M. Palmblad, “COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies.,” J. Proteome Res., vol. 17, no. 1, pp. 739–744, Jan. 2018.
  •  [9]      M. Metelev, I. A. Osterman, D. Ghilarov, N. F. Khabibullina, A. Yakimov, K. Shabalin, I. Utkina, D. Y. Travin, E. S. Komarova, M. Serebryakova, T. Artamonova, M. Khodorkovskii, A. L. Konevega, P. V Sergiev, K. Severinov, and Y. S. Polikanov, “Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel.,” Nat. Chem. Biol., vol. 13, no. 10, pp. 1129–1136, Oct. 2017.
  •  [10]      I. C. R. M. Kolder, S. J. van der Plas-Duivesteijn, G. Tan, G. F. Wiegertjes, M. Forlenza,  a T. Guler, D. Y. Travin, M. Nakao, T. Moritomo, I. Irnazarow, J. T. den Dunnen, S. Y. Anvar, H. J. Jansen, R. P. Dirks, M. Palmblad, B. Lenhard, C. V Henkel, and H. P. Spaink, “A full-body transcriptome and proteome resource for the European common carp.,” BMC Genomics, vol. 17, p. 701, Jan. 2016.
  •  [11]      D. Y. Travin and B. A. Feniouk, “Aging in Birds.,” Biochemistry. (Mosc)., vol. 81, no. 12, pp. 1558–1563, Dec. 2016.

Conference presentations:

  • Translation Inhibitor Klebsazolicin is Synthesized from a Peptide Precursor via Two Distinct Post-Translational Modifications Catalyzed by a Single YcaO-Enzyme
    D.Y. Travin, M. Metelev, D. Ghilarov M. Serebryakova, K. Severinov at 6th International Symposium on Antimicrobial Peptides (Poitiers, France, June 2018); poster presentation
  • Phasolicin – a founding member of a new group of thiazole/oxazole modified peptides inhibiting prokaryotic translation
    D.Y. Travin, Z. Watson, M. Metelev, F. Ward, I.A. Osterman, I. Khven, M. Serebryakova, Y. Polikanov, J. Cate and K. Severinov at 1st International RiPPs Conference (Granada, Spain, April 2019) ; oral presentation
  • Genome mining for novel bioactive peptides
    D.Y. Travin, D. Bikmetov and K. Severinov at 12th International Multiconference BGRS/SB-2020 (Novosibirsk, Russia, July 2020); oral presentation
  • The BacA and YejABEF peptide uptake transporters of Sinorhizobium meliloti mediate interspecies interactions between bacteria and between bacteria and plants Nicoud*, D. Y. Travin*, Q. Barrière, N. Busset, T. Timtchenko, B. Alunni, K. Severinov, P. Mergaert (* – co-presenters)  Symposium “ABC of membrane transport 2020” (Paris, France, Dec. 2020); oral presentation

Grants:

  •  LG Chem Scholarship 2019
  • Ostrogradsky stipend from the Embassy of France 2020
  • RFBR Grant for PhD students (“Аспиранты”) 2020
  • Systems Biology Fellowship (PM-Skoltech) 2021

Studies of novel bioactive peptides targeting bacterial translation.

Microbial natural products, mechanisms of antimicrobial resistance, protein-protein interactions, ecology and evolution of birds, proteomics and proteomic data analysis, mass-spectrometry.

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